Phylogenetic inference using transcriptomic data information
In molecular phylogenetics, relationships among individuals are determined using character traits, such as DNA, RNA or protein, which may be obtained using a variety of sequencing technologies. High-throughput next-generation sequencing has become a popular technique in transcriptomics, which represent a snapshot of gene expression. In eukaryotes, making phylogenetic inferences using RNA is complicated by alternative splicing, which produces multiple transcripts from a single gene. As such, a variety of approaches may be used to improve phylogenetic inference using transcriptomic data obtained from RNA-Seq and processed using computational phylogenetics.
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may be used to improve phylogeneticinferenceusingtranscriptomicdata obtained from RNA-Seq and processed using computational phylogenetics. There have...
may also be used to obtain the transcriptome of an organism, allowing inference of phylogenetic relationships usingtranscriptomicdata. The most common...
of genomic, "transcriptomic" (ESTs) or protein origin. For proteins, homologous sequences are typically grouped into families. For EST data, clustering...
novel probes that target low-copy genes usingtranscriptomics via Hyb-Seq. While nuclear genomes assembled using genome skims are extremely fragmented,...
They allow insights that cannot be gathered solely from transcriptomic analysis, as RNA data do not contain non-coding genomic regions and information...
within the context of the hypotheses being investigated. See also: Transcriptomic technologies. Proteome sequence analysis studies the complete set of...
(thanks to phylogenetic evolution and molecular chronology), chromosomal instability, contribution of ctDNA to metastasis through global transcriptomic patterns...
performed either using the sequences of a few very ancient proteins or by using ribosomal RNA sequence.[citation needed] Phylogenetic relationships extend...
(Research group Walter) Topic: Human Bioinformatics, e.g. Exome, Genomics, Transcriptomics, Metagenomics, Phenotyping, Bioimaging, Epigenetics and Cloud Computing...
fast and slow muscles in scallops revealed through proteomics and transcriptomics". BMC Genomics. 19 (1): 377. doi:10.1186/s12864-018-4770-2. PMC 5963113...
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Uno, Yoshinobu (2021). "Inference of evolution of vertebrate genomes and chromosomes from genomic and cytogenetic analyses using amphibians". Chromosome...
"The Making of Calibration Sausage Exemplified by Recalibrating the Transcriptomic Timetree of Jawed Vertebrates". Frontiers in Genetics. 12. 521693. doi:10...
sequencing, with a particular focus on spatial transcriptomics. She also has work on Bayesian experimental design using contextual multi-armed bandits, and has...
comparative genomic tools for comparing microbial species at the genomic, transcriptomic and functional levels. MicrobesOnline was developed by the Virtual Institute...
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