Global Information Lookup Global Information

Minimum information about a microarray experiment information


Minimum information about a microarray experiment (MIAME) is a standard created by the FGED Society for reporting microarray experiments.[1]

MIAME is intended to specify all the information necessary to interpret the results of the experiment unambiguously and to potentially reproduce the experiment. While the standard defines the content required for compliant reports, it does not specify the format in which this data should be presented. MIAME describes the minimum information required to ensure that microarray data can be easily interpreted and that results derived from its analysis can be independently verified.[2] There are a number of file formats used to represent this data, as well as both public and subscription-based repositories for such experiments.[2] Additionally, software exists to aid the preparation of MIAME-compliant reports.

MIAME revolves around six key components: raw data, normalized data, sample annotations, experimental design, array annotations, and data protocols.

  1. ^ "MIAME home page". FGED Society website. Retrieved 2012-09-13.
  2. ^ a b Brazma, Alvis; Hingamp, Pascal; Quackenbush, John; Sherlock, Gavin; Spellman, Paul; Stoeckert, Chris; Aach, John; Ansorge, Wilhelm; Ball, Catherine A.; Causton, Helen C.; Gaasterland, Terry; Glenisson, Patrick; Holstege, Frank C.P.; Kim, Irene F.; Markowitz, Victor; Matese, John C.; Parkinson, Helen; Robinson, Alan; Sarkans, Ugis; Schulze-Kremer, Steffen; Stewart, Jason; Taylor, Ronald; Vilo, Jaak; Vingron, Martin (December 2001). "Minimum information about a microarray experiment (MIAME)—toward standards for microarray data". Nature Genetics. 29 (4): 365–371. doi:10.1038/ng1201-365. ISSN 1061-4036. PMID 11726920. S2CID 6994467.

and 25 Related for: Minimum information about a microarray experiment information

Request time (Page generated in 0.9518 seconds.)

Minimum information about a microarray experiment

Last Update:

Minimum information about a microarray experiment (MIAME) is a standard created by the FGED Society for reporting microarray experiments. MIAME is intended...

Word Count : 242

DNA microarray

Last Update:

produced with non-proprietary chips: For example, the "Minimum Information About a Microarray Experiment" (MIAME) checklist helps define the level of detail...

Word Count : 5427

Gene Expression Omnibus

Last Update:

derived from microarray or RNA-Seq experimental data. These data need to conform to the minimum information about a microarray experiment (MIAME) format...

Word Count : 235

Minimum information standard

Last Update:

adhered to enough. Minimum Information About a Microarray Experiment (MIAME) describes the Minimum Information About a Microarray Experiment that is needed...

Word Count : 1774

Proteomics Standards Initiative

Last Update:

define minimal requirements. For microarrays the MGED Society defined the minimum information about a microarray experiment (MIAME). The standards for reporting...

Word Count : 1301

Minimum Information Required About a Glycomics Experiment

Last Update:

The Minimum Information Required About a Glycomics Experiment (MIRAGE) initiative is part of the Minimum Information Standards and specifically applies...

Word Count : 939

Transcriptomics technologies

Last Update:

MIAME – Minimum Information About a Microarray Experiment; MINSEQE – Minimum Information about a high-throughput nucleotide SEQuencing Experiment. omics...

Word Count : 12516

FGED Society

Last Update:

microarray experiment for the purpose of interpretation and replication of the results. It was the first published example of a minimum information standard...

Word Count : 1064

Terry Gaasterland

Last Update:

Jaak; Vingron, Martin (2001). "Minimum information about a microarray experiment (MIAME)—toward standards for microarray data". Nature Genetics. 29 (4):...

Word Count : 366

Microarray analysis techniques

Last Update:

Microarray analysis techniques are used in interpreting the data generated from experiments on DNA (Gene chip analysis), RNA, and protein microarrays...

Word Count : 3559

RNAi Global Initiative

Last Update:

(Minimum Information About a Microarray Experiment), the RNAi Global Initiative has contributed work towards a community-wide effort known as the Minimum Information...

Word Count : 317

Comparative genomic hybridization

Last Update:

PCR and flow cytometry experiments may be employed to confirm results. Array comparative genomic hybridization (also microarray-based comparative genomic...

Word Count : 5284

Biostatistics

Last Update:

Some examples of other analysis on genomics data comes from microarray or proteomics experiments. Often concerning diseases or disease stages. Ecology, ecological...

Word Count : 6502

Machine learning in bioinformatics

Last Update:

learning algorithms to bioinformatics, including genomics, proteomics, microarrays, systems biology, evolution, and text mining. Prior to the emergence...

Word Count : 8080

RNA integrity number

Last Update:

(2009-04-01). "The MIQE Guidelines: Minimum Information for Publication of Quantitative Real-Time PCR Experiments". Clinical Chemistry. 55 (4): 611–622...

Word Count : 2067

Travelling salesman problem

Last Update:

and Microarray Gene Ordering". Applied Intelligence. 26 (3): 183–195. CiteSeerX 10.1.1.151.132. doi:10.1007/s10489-006-0018-y. S2CID 8130854. Kahng, A. B...

Word Count : 11464

List of statistics articles

Last Update:

value of sample information Experiment Experimental design diagram Experimental event rate Experimental uncertainty analysis Experimenter's bias Experimentwise...

Word Count : 8280

Arabidopsis thaliana

Last Update:

doi:10.1126/science.3898363. PMID 3898363 "TAIR - Gene Expression - Microarray - Public Datasets". Archived from the original on 4 December 2021. Retrieved...

Word Count : 8632

Multiple comparisons problem

Last Update:

John D.; Tusher, Virginia (2001). "Empirical Bayes analysis of a microarray experiment". Journal of the American Statistical Association. 96 (456): 1151–1160...

Word Count : 2556

Receiver operating characteristic

Last Update:

Flach, P. (2011-03-21). "Caveats and pitfalls of ROC analysis in clinical microarray research (and how to avoid them)". Briefings in Bioinformatics. 13 (1)...

Word Count : 7944

Principal component analysis

Last Update:

represents a different repetition of the experiment, and each of the p columns gives a particular kind of feature (say, the results from a particular...

Word Count : 14283

Biclustering

Last Update:

ISBN 978-1-84821-473-6. R. Balamurugan; A.M. Natarajan; K. Premalatha (2016). "A Modified Harmony Search Method for Biclustering Microarray Gene Expression Data". International...

Word Count : 3158

Factor analysis

Last Update:

oligonucleotide DNA microarrays data at probe level for Affymetrix GeneChips. In this case, the latent variable corresponds to the RNA concentration in a sample....

Word Count : 10026

Metaheuristic

Last Update:

modeling R. Balamurugan; A.M. Natarajan; K. Premalatha (2015). "Stellar-Mass Black Hole Optimization for Biclustering Microarray Gene Expression Data"....

Word Count : 3195

Escherichia coli

Last Update:

separate experiments with E. coli published on Nature showed the potential of using living cells for computing tasks and storing information. A team formed...

Word Count : 11093

PDF Search Engine © AllGlobal.net