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Principal component analysis information


Principal component analysis (PCA) is a linear dimensionality reduction technique with applications in exploratory data analysis, visualization and data preprocessing.

The data is linearly transformed onto a new coordinate system such that the directions (principal components) capturing the largest variation in the data can be easily identified.

The principal components of a collection of points in a real coordinate space are a sequence of unit vectors, where the -th vector is the direction of a line that best fits the data while being orthogonal to the first vectors. Here, a best-fitting line is defined as one that minimizes the average squared perpendicular distance from the points to the line. These directions (i.e., principal components) constitute an orthonormal basis in which different individual dimensions of the data are linearly uncorrelated. Many studies use the first two principal components in order to plot the data in two dimensions and to visually identify clusters of closely related data points.[1]

PCA of a multivariate Gaussian distribution centered at (1,3) with a standard deviation of 3 in roughly the (0.866, 0.5) direction and of 1 in the orthogonal direction. The vectors shown are the eigenvectors of the covariance matrix scaled by the square root of the corresponding eigenvalue, and shifted so their tails are at the mean.

Principal component analysis has applications in many fields such as population genetics, microbiome studies, and atmospheric science.

  1. ^ Jolliffe, Ian T.; Cadima, Jorge (2016-04-13). "Principal component analysis: a review and recent developments". Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences. 374 (2065): 20150202. Bibcode:2016RSPTA.37450202J. doi:10.1098/rsta.2015.0202. PMC 4792409. PMID 26953178.

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counterpart of principal component analysis for categorical data. MCA can be viewed as an extension of simple correspondence analysis (CA) in that it...

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variables, such as by factor analysis, regression analysis, or principal component analysis Principal component analysis – transformation of a sample...

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dimensionality reduction, such as singular value decomposition and principal component analysis. Consider a dataset represented as a matrix (or a database table)...

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Dimensionality reduction

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fewer dimensions. The data transformation may be linear, as in principal component analysis (PCA), but many nonlinear dimensionality reduction techniques...

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correspond to principal components and the eigenvalues to the variance explained by the principal components. Principal component analysis of the correlation...

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as principal component analysis (PCA), independent component analysis (ICA), linear discriminant analysis (LDA) and canonical correlation analysis (CCA)...

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as the Karhunen-Loève decomposition. A rigorous analysis of functional principal components analysis was done in the 1970s by Kleffe, Dauxois and Pousse...

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factors or principal components in an analysis. The scree plot is used to determine the number of factors to retain in an exploratory factor analysis (FA) or...

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analysis, also known as Horn's parallel analysis, is a statistical method used to determine the number of components to keep in a principal component...

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