Umbrella term to describe proteins most abundantly expressed by genes in environmental samples
Metaproteomics (also Community Proteomics, Environmental Proteomics, or Community Proteogenomics) is an umbrella term for experimental approaches to study all proteins in microbial communities and microbiomes from environmental sources. Metaproteomics is used to classify experiments that deal with all proteins identified and quantified from complex microbial communities. Metaproteomics approaches are comparable to gene-centric environmental genomics, or metagenomics.[1][2]
^Dill BD, et al. (2010). "Metaproteomics: Techniques and Applications". Environmental Molecular Microbiology. Caister Academic Press. ISBN 978-1-904455-52-3.
^Marco, D, ed. (2010). Metagenomics: Theory, Methods and Applications. Caister Academic Press. ISBN 978-1-904455-54-7.
communities. Metaproteomics approaches are comparable to gene-centric environmental genomics, or metagenomics. The term "metaproteomics" was proposed...
metagenomics) to analyze microbial activity (metatranscriptomics, metaproteomics, metabolomics). Based on metagenome data, microbial genomes can be reconstructed...
identified non-coding RNAs (ncRNAs) such as ribozymes from microbiota. Metaproteomics is an approach that studies the proteins expressed by microbiota, giving...
genome recovery". Microbial Metagenomics, Metatranscriptomics, and Metaproteomics. Methods in Enzymology. Vol. 531. pp. 3–19. doi:10.1016/B978-0-12-407863-5...
host-microbiome interactions. For instance, metagenomics, metatranscriptomics, metaproteomics and metabolomics methods are all used to provide information on the...
for the surveillance of arboviruses. Binning Epidemiology and sewage Metaproteomics Microbial ecology Pathogenomics Wooley JC, Godzik A, Friedberg I (February...
Chang, Yun-Juan; Shah, Manesh; VerBerkmoes, Nathan C. (2012-05-08). "Metaproteomics of a gutless marine worm and its symbiotic microbial community reveal...
insights into biogeochemical potential, whereas metatranscriptomics and metaproteomics can measure actual expression of genetic potential but remains more...
Chang, Yun-Juan; Shah, Manesh; VerBerkmoes, Nathan C. (8 May 2012). "Metaproteomics of a gutless marine worm and its symbiotic microbial community reveal...
Unipept is an open source research tool for biodiversity analysis of metaproteomics samples. It also contains a tool to select peptides to use as biomarker...
Joost; Tims, Sebastian; Knol, Jan; Chelsky, Daniel (2019-03-21). "Metaproteomic and 16S rRNA Gene Sequencing Analysis of the Infant Fecal Microbiome"...
from seagrass to coastal sediments, through meta-omic approaches, e.g. metaproteomics and metagenomics. Her primary animal models constitute of shrimp, gutless-worms...
Angela D.; Paša-Tolić, Ljiljana; Hallam, Steven J. (2014-08-05). "Metaproteomics reveals differential modes of metabolic coupling among ubiquitous oxygen...
the reconstruction of genomes from natural ecosystems and community metaproteomic analyses. Through genomics, her group has provided insights into previously...
Bioinformatics, e.g. Genomics, Transcriptomics, Metagenomics, Proteomics, Metaproteomics, Metabolomics and Cloud Computing Bioinformatics for Proteomics (BioInfra...
Dubilier, Nicole; Cavanaugh, Colleen; Moran, Mary Ann (18 June 2013). "Metaproteomics Reveals Abundant Transposase Expression in Mutualistic Endosymbionts"...
J., Shah, M., VerBerkmoes, N.C., Zarzycki, J. and Fuchs, G. (2012) "Metaproteomics of a gutless marine worm and its symbiotic microbial community reveal...
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