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Jpred information


Jpred v.4 is the latest version of the JPred Protein Secondary Structure Prediction Server[1] which provides predictions by the JNet algorithm, one of the most accurate methods for secondary structure prediction,[2] that has existed since 1998 in different versions.[3]

In addition to protein secondary structure, JPred also makes predictions of solvent accessibility and coiled-coil regions. The JPred service runs up to 134 000 jobs per month and has carried out over 2 million predictions in total for users in 179 countries.[4]

  1. ^ "JPred4: A Protein Secondary Structure Prediction Server". Retrieved 16 July 2015.
  2. ^ Drozdetskiy, Alexey; Cole, Chris; Procter, James; Barton, Geoffrey (Apr 16, 2015). "JPred4: a protein secondary structure prediction server". Nucleic Acids Research. 43 (W1): W389–W394. doi:10.1093/nar/gkv332. PMC 4489285. PMID 25883141.
  3. ^ "JPred old news". Oct 25, 1998. Retrieved 16 Jul 2015.
  4. ^ "JPred4 statistics". Retrieved 16 July 2015.

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Jpred

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Jpred v.4 is the latest version of the JPred Protein Secondary Structure Prediction Server which provides predictions by the JNet algorithm, one of the...

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List of protein secondary structure prediction programs

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theory/Bayesian inference Many implementations Basic GOR GOR V 2002 (GOR V) Jpred Multiple Neural network assignment from PSI-BLAST and HMMER profiles. Predicts...

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Predicate dispatch

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Experimental implementations have been created for Common LISP, and for Java (JPred). It allows open extension of previously declared methods at a fine-grained...

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Protein structure prediction

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conformation required for the presence of a complete beta sheet. PSIPRED and JPRED are some of the most known programs based on neural networks for protein...

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Jalview

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to many external web services to import data and perform calculations. Jpred "Release History". Archived from the original on 2019-03-06. Retrieved 2016-05-30...

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C11orf91

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Server. Biogem. Retrieved 5 December 2023. JPred 4: A Protein Secondary Structure Prediction Server. JPred 4. Retrieved 5 December 2023. Predict Protein...

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List of alignment visualization software

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freeware ? ? www.ivistmsa.com Jalview Secondary structure prediction via JPred 4 Clustal O, Clustal, GLprobs, MSAprobs, MUSCLE, MAFFT, Probcons, TCoffee...

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ARMH1

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"Bioinformatics Toolkit". toolkit.tuebingen.mpg.de. Retrieved 2023-12-07. "JPred Secondary Structure Prediction". www.jalview.org. Retrieved 2023-12-07....

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PSIPRED

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correctly in the secondary structure states, namely helix, strand, and coil. Jpred Protein design Protein function prediction De novo protein structure prediction...

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DM domain

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vertebrates, and neither its structure nor function is unknown.: species tree  Jpred predicts the human version of the section to be mostly coils; it also suggests...

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C10orf35

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Retrieved 6 May 2016. "A Protein Secondary Structure Prediction Server". JPred. Retrieved 9 May 2016. "c10orf35". UniProt. Retrieved 9 May 2016. "c4orf32"...

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C4orf19

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Multiple Sequence Alignment < EMBL-EBI". www.ebi.ac.uk. Retrieved 2021-12-17. "JPred: A Protein Secondary Structure Prediction Server". www.compbio.dundee.ac...

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TMEM275

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Secondary Structure Prediction Server". www.biogem.org. Retrieved 2020-05-05. "JPred: A Protein Secondary Structure Prediction Server". www.compbio.dundee.ac...

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C16orf78

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secondary structure prediction". npsa-prabi.ibcp.fr. Retrieved 2019-05-05. "JPred: A Protein Secondary Structure Prediction Server". compbio.dundee.ac.uk...

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TMEM125

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pl?page=/NPSA/npsa_sopma.html Jpred4 http://www.compbio.dundee.ac.uk/jpred/ Ali2D https://omictools.com/ali2d-tool Phyre2 http://www.sbg.bio.ic.ac...

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C22orf23

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server". 2019-05-04. "A Protein Secondary Structure Prediction Server". Jpred 4 incorporating Jnet. 2019-05-04. "SOPMA SECONDARY STRUCTURE PREDICTION...

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TEDC2

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Secondary Structure Prediction Server". www.biogem.org. Retrieved 2019-04-22. "JPred: A Protein Secondary Structure Prediction Server". www.compbio.dundee.ac...

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C3orf67

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2018-04-30. "NetPhos 3.1 Server". www.cbs.dtu.dk. Retrieved 2018-04-30. "JPred: A Protein Secondary Structure Prediction Server". www.compbio.dundee.ac...

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Transmembrane protein 151A

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Ensembl genome browser 96". uswest.ensembl.org. Retrieved 27 April 2019. "JPRED". "NPS@ : GOR4 secondary structure prediction". npsa-prabi.ibcp.fr. Retrieved...

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C9orf50

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structure for C9orf50 was predicted by using analysis from Gor, COILS, CFSSP, JPRED, and SOPMA.[1],[2],[3],[4],[5] Helix indicated by green cylinders, beta...

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