Broad Institute, University of California, San Diego
Stable release
3.9.11 rc4 b216
/ May 2019
Operating system
OS X 10.7 and later
Ubuntu, SuSE, CentOS
Type
genomic analysis
License
BSD[1]
Website
www.genepattern.org
GenePattern is a freely available computational biology open-source software package originally created and developed at the Broad Institute for the analysis of genomic data. Designed to enable researchers to develop, capture, and reproduce genomic analysis methodologies, GenePattern was first released in 2004. GenePattern is currently developed at the University of California, San Diego.
^"GenePattern: A platform for reproducible bioinformatics". GitHub. 5 November 2021.
earlier in this article. GenePattern is a predominantly genomic analysis platform with over 200 tools for analysis of gene expression, proteomics, and...
several tools and data sources for genomics analysis: Cytoscape, Galaxy, GenePattern, Genomica, geWorkbench, InSilico DB, the Integrative Genomics Viewer...
types of molecular genes: protein-coding genes and non-coding genes. During gene expression (the synthesis of RNA or protein from a gene), DNA is first copied...
Pattern recognition is the task of assigning a class to an observation based on patterns extracted from data. While similar, pattern recognition (PR) is...
spotting gene (incorrectly called the piebald gene). The same pattern that applies to cats also applies to dogs when the white spotting gene involved...
a scientific workflow system Galaxy, initially targeted at genomics GenePattern, a powerful scientific workflow system that provides access to hundreds...
and voles based on differences in gene expression patterns. The model can be used to explain the differences in gene expression between mice and vole teeth...
Individual Thought Patterns is the fifth studio album by American death metal band Death, released on June 22, 1993, by Relativity Records. It is the only...
Balding appears to follow an autosomal dominant pattern of inheritance, but paternally inherited genes may also be a factor, as roughly 80% of bald men...
transcription pattern over time yields biologically essential s.t. patterns. Gene regulatory networks are responsible for regulation the time course of gene expression...
The dun gene is a dilution gene that affects both red and black pigments in the coat color of a horse. The dun gene lightens most of the body while leaving...
The gene responsible for the coloring of a classic tabby is recessive. Many American shorthair cats demonstrate this pattern. The ticked tabby pattern is...
Spatiotemporal gene expression is the activation of genes within specific tissues of an organism at specific times during development. Gene activation patterns vary...
there is a white spotting gene present along with a recessive allele of the agouti gene, which evens out the common striped pattern of the colors of the coat...
switch from one pattern of gene expression to another. Cellular differentiation during development can be understood as the result of a gene regulatory network...
A segmentation gene is a gene involved in the early stages of pattern formation that define repeated units (metameres) in a segmented organism, usually...
biology, pattern formation refers to the generation of complex organizations of cell fates in space and time. The role of genes in pattern formation...
similar genes such as pax-6, from the evo-devo gene toolkit. These genes are ancient, being highly conserved among phyla; they generate the patterns in time...
tortoise among some others. The Lp (leopard complex) gene is responsible for the leopard color pattern in horses, which not only produces a spotted coat...
overo pattern tends to have white spots on the flanks and face, surrounded by a dark "frame" of color. If two horses with the frame overo gene are bred...
and mottled skin. The leopard complex gene is also linked to abnormalities in the eyes and vision. These patterns are most closely identified with the...
acquired by IDBS.[citation needed] Galaxy: initially targeted at genomics GenePattern: A powerful scientific workflow system that provides access to hundreds...
locus is the gene for the sepia pattern, which allele is represented by cb. This is the darkest of all of the pigment restricting patterns—pigment is only...
by regulating downstream gene networks involved in body patterning. Mutations in homeotic genes cause displaced body parts (homeosis), such as antennae...
The champagne gene, in combination with some white patterninggenes, can also produce unexpected phenotypes. Horses with the leopard gene or Appaloosas...
distance between other genes on a chromosome. Maps provide researchers with the opportunity to predict the inheritance patterns of specific traits, which...
pattern being an expression of two different sets of equine coat color genes in one horse. These forms are not heritable. In some horses the pattern seems...
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