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Cytoscape information


Original author(s)Institute for Systems Biology
Developer(s)Cytoscape Team
Initial releaseJuly 2002
Stable release
3.8.2 / 29 October 2020; 3 years ago (2020-10-29)[1]
Written inJava
Operating systemAny (Java-based)
TypeImage processing
LicenseLGPL
Websitewww.cytoscape.org

Cytoscape is an open source bioinformatics software platform for visualizing molecular interaction networks and integrating with gene expression profiles and other state data. Additional features are available as plugins. Plugins are available for network and molecular profiling analyses, new layouts, additional file format support and connection with databases and searching in large networks. Plugins may be developed using the Cytoscape open Java software architecture by anyone and plugin community development is encouraged.[2][3] Cytoscape also has a JavaScript-centric sister project named Cytoscape.js that can be used to analyse and visualise graphs in JavaScript environments, like a browser.

  1. ^ "Cytoscape 3.8.2 is released!". groups.google.com. Retrieved 11 March 2021.
  2. ^ Shannon P, Markiel A, Ozier O, et al. (2003). "Cytoscape: a software environment for integrated models of biomolecular interaction networks". Genome Res. 13 (11): 2498–504. doi:10.1101/gr.1239303. PMC 403769. PMID 14597658.
  3. ^ Bell GW, Lewitter F (2006). Visualizing networks. Meth. Enzymol. Vol. 411. pp. 408–21. doi:10.1016/S0076-6879(06)11022-8. ISBN 978-0-12-182816-5. PMID 16939803.

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