1.7.7
/ 7 December 2019; 4 years ago (7 December 2019)
Repository
github.com/bioperl/bioperl-live
Written in
Perl
Type
Bioinformatics
License
Artistic License and GPL
Website
bioperl.org
BioPerl[1][2] is a collection of Perl modules that facilitate the development of Perl scripts for bioinformatics applications. It has played an integral role in the Human Genome Project.[3]
^Stajich, J. E.; Block, D.; Boulez, K.; Brenner, S.; Chervitz, S.; Dagdigian, C.; Fuellen, G.; Gilbert, J.; Korf, I.; Lapp, H.; Lehväslaiho, H.; Matsalla, C.; Mungall, C. J.; Osborne, B. I.; Pocock, M. R.; Schattner, P.; Senger, M.; Stein, L. D.; Stupka, E.; Wilkinson, M. D.; Birney, E. (2002). "The BioPerl Toolkit: Perl Modules for the Life Sciences". Genome Research. 12 (10): 1611–1618. doi:10.1101/gr.361602. PMC 187536. PMID 12368254.
^"BioPerl publications - BioPerl". Archived from the original on 2007-02-02. Retrieved 2007-01-21. A complete, up-to-date list of BioPerl references
^Lincoln Stein (1996). "How Perl saved the human genome project". The Perl Journal. 1 (2). Archived from the original on 2007-02-02. Retrieved 2009-02-25.
BioPerl is a collection of Perl modules that facilitate the development of Perl scripts for bioinformatics applications. It has played an integral role...
The BioRuby project was first started in 2000 by Toshiaki Katayama as a Ruby implementation of similar bioinformatics packages such as BioPerl and BioPython...
Perl is a high-level, general-purpose, interpreted, dynamic programming language. Though Perl is not officially an acronym, there are various backronyms...
capabilities to their respective programming languages, including BioPerl, BioRuby and BioJava. Early developers on the project included Jeff Chang, Andrew...
BioJava are BioPython, BioPerl, BioRuby, EMBOSS etc. In October 2012, the first paper on BioJava was published. This paper detailed BioJava's modules...
Chicago, 1969 A haplotype map of the human genome, The International HapMap Consortium, Nature 2005 Genetic distance BioPerl - Bio::PopGen::PopStats...
It also has many useful basic tools and applications such as: PERL (including BioPerl modules) PHP Apache 2 MySQL OpenOffice.org KPDF Reader Mozilla...
Sanger, Solexa and Illumina 1.3+) BioPerl version 1.6.1 onwards (interconverts Sanger, Solexa and Illumina 1.3+) BioRuby version 1.4.0 onwards (interconverts...
1101/gr.361602. PMC 187536. PMID 12368254. Anon (2013). "Ewan Birney - BioPerl". bioperl.org. Archived from the original on 12 December 2012. Bateman, A.;...
include AWK and Perl. sh – the Bourne shell, a command-line shell for Unix. Anti-Spam SMTP Proxy AxKit BackupPC Big Medium BioMOBY BioPerl Bonsai Bricolage...
computer programmer, linguist and author. He is best known for creating the Perl programming language and the patch tool. Wall grew up in Los Angeles and...
packages which provide this conversion functionality, such as BioPython, BioRuby and BioPerl. The SAM/BAM files use the CIGAR (Compact Idiosyncratic Gapped...
Stein, L. D.; Stupka, E.; Wilkinson, M. D.; Birney, E. (2002). "The BioPerl Toolkit: Perl Modules for the Life Sciences". Genome Research. 12 (10): 1611–1618...
implementation of similar bioinformatics packages such as BioPerl and BioPython and BioRuby. BioPHP was developed in December 2005 by Joseba Bikandi at the...
Biostrings::pairwiseAlignment Dynamic programming Both Both + Ends-free P. Aboyoun 2008 BioPerl dpAlign Dynamic programming Both Both + Ends-free Y. M. Chan 2003 BLASTZ...
(i.e. Perl and Java) at that time. Nevertheless, the BioMOBY system exhibits what can only be described as Semantic Web-like behaviours. The BioMOBY Object...
Sciences 2012". Archived from the original on 2013-01-12. "Suzi Lewis - BioPerl". Archived from the original on 2012-02-05. "Berkeley Drosophila Genome...
and/or adopting GMOD components for model organism databases. Bioperl, BioJava, Biopython, BioRuby, etc. Ensembl Gene Ontology DAS Genomics Unified Schema...
measuring bio-impedance. Changes in bio-impedance are generated by blood volume and blood flow and registered by a rheographic device. The pulsative bio-impedance...
Will Liverman playing the title role. It received positive reviews. Arnold Perl and Marvin Worth attempted to create a drama film based on The Autobiography...
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/ 7 December 2019