Yet Another Scientific Artificial Reality Application
Original author(s)
Elmar Krieger Jacobus van Meel
Developer(s)
YASARA Biosciences WHAT IF Foundation Spronk NMR Consultancy
Initial release
November 1993; 30 years ago (1993-11)
Stable release
21.8.26
/ 26 August 2021; 2 years ago (2021-08-26)
Written in
C, assembly, Python
Operating system
Windows, Linux, OS X
Platform
x86
Available in
English
Type
Molecular modelling
License
Proprietary, free version for elementary structure work
Website
www.yasara.org
Yet Another Scientific Artificial Reality Application (YASARA) is a computer program for molecular visualising, modelling, and dynamics. It has many scientific uses, as expressed by the large number of scientific articles mentioning the software.[1] The free version of YASARA[2] is well suited to bioinformatics education. A series of freely available bioinformatics courses exist that use this software.
Students working on an educational task using YASARA.
See the Center for Molecular and Biomolecular Informatics (CMBI) education pages for a series of examples.[3]
Krieger E, Koraimann G, Vriend G (May 2002). "Increasing the precision of comparative models with YASARA NOVA—a self-parameterizing force field". Proteins. 47 (3): 393–402. doi:10.1002/prot.10104. PMID 11948792.
Modelling: Krieger E, Vriend G (Feb 2002). "Models@Home: distributed computing in bioinformatics using a screensaver based approach". Bioinformatics. 18 (2): 315–8. doi:10.1093/bioinformatics/18.2.315. PMID 11847079.
Dynamics: Krieger E, Darden T, Nabuurs SB, Finkelstein A, Vriend G (Dec 2004). "Making optimal use of empirical energy functions: force-field parameterization in crystal space". Proteins. 57 (4): 678–83. CiteSeerX 10.1.1.472.6529. doi:10.1002/prot.20251. PMID 15390263.
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