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Steven Salzberg information


Steven Salzberg
Steven Salzberg at the Biological Data Science conference (CSHL) in 2018
Born
Steven Lloyd Salzberg

1960 (age 63–64)
Alma materYale University
Harvard University
Known forGLIMMER[3]
MUMmer[4]
AMOS assembler[5]
Bowtie[6]
TopHat[7]
SpouseClaudia Pasche[8]
AwardsBen Franklin Award (2013)
Scientific career
InstitutionsUniversity of Maryland, College Park
The Institute for Genomic Research
Johns Hopkins University
ThesisLearning with nested generalized exemplars (1989)
Doctoral advisorWilliam Aaron Woods[1]
Doctoral students
  • Cole Trapnell[1]
  • Benjamin Langmead
  • Adam M. Phillippy
Other notable studentsOlga Troyanskaya[2]
Websitesalzberg-lab.org

Steven Lloyd Salzberg (born 1960) is an American computational biologist and computer scientist who is a Bloomberg Distinguished Professor of Biomedical Engineering, Computer Science, and Biostatistics at Johns Hopkins University, where he is also Director of the Center for Computational Biology.

  1. ^ a b Steven Salzberg at the Mathematics Genealogy Project
  2. ^ Mullins, J.; Morrison Mckay, B. (2011). "International Society for Computational Biology Honors Michael Ashburner and Olga Troyanskaya with Top Bioinformatics/Computational Biology Awards for 2011". PLOS Computational Biology. 7 (6): e1002081. Bibcode:2011PLSCB...7E2081M. doi:10.1371/journal.pcbi.1002081. PMC 3107244.
  3. ^ Salzberg, S. L.; Delcher, A. L.; Kasif, S.; White, O. (1998). "Microbial gene identification using interpolated Markov models". Nucleic Acids Research. 26 (2): 544–548. doi:10.1093/nar/26.2.544. PMC 147303. PMID 9421513.
  4. ^ Delcher, A. L.; Kasif, S.; Fleischmann, R. D.; Peterson, J.; White, O.; Salzberg, S. L. (1999). "Alignment of whole genomes". Nucleic Acids Research. 27 (11): 2369–2376. doi:10.1093/nar/27.11.2369. PMC 148804. PMID 10325427.
  5. ^ Sommer, D. D.; Delcher, A. L.; Salzberg, S. L.; Pop, M. (2007). "Minimus: A fast, lightweight genome assembler". BMC Bioinformatics. 8: 64. doi:10.1186/1471-2105-8-64. PMC 1821043. PMID 17324286.
  6. ^ Langmead, B.; Trapnell, C.; Pop, M.; Salzberg, S. L. (2009). "Ultrafast and memory-efficient alignment of short DNA sequences to the human genome". Genome Biology. 10 (3): R25. doi:10.1186/gb-2009-10-3-r25. PMC 2690996. PMID 19261174.
  7. ^ Trapnell, C.; Pachter, L.; Salzberg, S. L. (2009). "TopHat: Discovering splice junctions with RNA-Seq". Bioinformatics. 25 (9): 1105–1111. doi:10.1093/bioinformatics/btp120. PMC 2672628. PMID 19289445.
  8. ^ Cite error: The named reference biosketch was invoked but never defined (see the help page).

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MUMMER software package were designed by Art Delcher, Simon Kasif and Steven Salzberg. Mummer was the first whole genome comparison system developed in Bioinformatics...

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systematic company creation opportunities. Salzberg grew up in Edison, New Jersey and attended J. P. Stevens High School where he graduated as valedictorian...

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Johns Hopkins School of Medicine

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Lior Pachter

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at the Mathematics Genealogy Project Trapnell, Cole; Pachter, Lior; Salzberg, Steven L. (2009). "TopHat: discovering splice junctions with RNA-Seq". Bioinformatics...

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Luc Montagnier

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autistic children that was sharply criticized by computational biologist Steven Salzberg. In 2017, 106 academic scientists wrote an open letter "calling [Montagnier]...

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Aviv Regev

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Joe Nickell

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Mikhail Gelfand

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Terry Gaasterland

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Bloomberg Distinguished Professorships

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Didier Raoult

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Michael Levitt

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Ben Langmead

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in computer science from the University of Maryland, supervised by Steven Salzberg, in 2009 and 2012, respectively. Langmead is known for developing the...

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