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DNA computing information


The biocompatible computing device: Deoxyribonucleic acid (DNA)

DNA computing is an emerging branch of unconventional computing which uses DNA, biochemistry, and molecular biology hardware, instead of the traditional electronic computing. Research and development in this area concerns theory, experiments, and applications of DNA computing. Although the field originally started with the demonstration of a computing application by Len Adleman in 1994, it has now been expanded to several other avenues such as the development of storage technologies,[1][2][3] nanoscale imaging modalities,[4][5][6] synthetic controllers and reaction networks,[7][8][9][10] etc.

  1. ^ Church, G. M.; Gao, Y.; Kosuri, S. (2012-08-16). "Next-Generation Digital Information Storage in DNA". Science. 337 (6102): 1628. Bibcode:2012Sci...337.1628C. doi:10.1126/science.1226355. ISSN 0036-8075. PMID 22903519. S2CID 934617.
  2. ^ Erlich, Yaniv; Zielinski, Dina (2017-03-02). "DNA Fountain enables a robust and efficient storage architecture". Science. 355 (6328): 950–954. Bibcode:2017Sci...355..950E. doi:10.1126/science.aaj2038. ISSN 0036-8075. PMID 28254941. S2CID 13470340.
  3. ^ Organick, Lee; Ang, Siena Dumas; Chen, Yuan-Jyue; Lopez, Randolph; Yekhanin, Sergey; Makarychev, Konstantin; Racz, Miklos Z.; Kamath, Govinda; Gopalan, Parikshit; Nguyen, Bichlien; Takahashi, Christopher N. (March 2018). "Random access in large-scale DNA data storage". Nature Biotechnology. 36 (3): 242–248. doi:10.1038/nbt.4079. ISSN 1546-1696. PMID 29457795. S2CID 205285821.
  4. ^ Shah, Shalin; Dubey, Abhishek K.; Reif, John (2019-04-10). "Programming Temporal DNA Barcodes for Single-Molecule Fingerprinting". Nano Letters. 19 (4): 2668–2673. Bibcode:2019NanoL..19.2668S. doi:10.1021/acs.nanolett.9b00590. ISSN 1530-6984. PMID 30896178. S2CID 84841635.
  5. ^ Sharonov, Alexey; Hochstrasser, Robin M. (2006-12-12). "Wide-field subdiffraction imaging by accumulated binding of diffusing probes". Proceedings of the National Academy of Sciences. 103 (50): 18911–18916. Bibcode:2006PNAS..10318911S. doi:10.1073/pnas.0609643104. ISSN 0027-8424. PMC 1748151. PMID 17142314.
  6. ^ Jungmann, Ralf; Avendaño, Maier S.; Dai, Mingjie; Woehrstein, Johannes B.; Agasti, Sarit S.; Feiger, Zachary; Rodal, Avital; Yin, Peng (May 2016). "Quantitative super-resolution imaging with qPAINT". Nature Methods. 13 (5): 439–442. doi:10.1038/nmeth.3804. ISSN 1548-7105. PMC 4941813. PMID 27018580.
  7. ^ Shah, Shalin; Wee, Jasmine; Song, Tianqi; Ceze, Luis; Strauss, Karin; Chen, Yuan-Jyue; Reif, John (2020-05-04). "Using Strand Displacing Polymerase To Program Chemical Reaction Networks". Journal of the American Chemical Society. 142 (21): 9587–9593. doi:10.1021/jacs.0c02240. ISSN 0002-7863. PMID 32364723. S2CID 218504535.
  8. ^ Chen, Yuan-Jyue; Dalchau, Neil; Srinivas, Niranjan; Phillips, Andrew; Cardelli, Luca; Soloveichik, David; Seelig, Georg (October 2013). "Programmable chemical controllers made from DNA". Nature Nanotechnology. 8 (10): 755–762. Bibcode:2013NatNa...8..755C. doi:10.1038/nnano.2013.189. ISSN 1748-3395. PMC 4150546. PMID 24077029.
  9. ^ Srinivas, Niranjan; Parkin, James; Seelig, Georg; Winfree, Erik; Soloveichik, David (2017-12-15). "Enzyme-free nucleic acid dynamical systems". Science. 358 (6369): eaal2052. doi:10.1126/science.aal2052. ISSN 0036-8075. PMID 29242317.
  10. ^ Soloveichik, David; Seelig, Georg; Winfree, Erik (2010-03-23). "DNA as a universal substrate for chemical kinetics". Proceedings of the National Academy of Sciences. 107 (12): 5393–5398. Bibcode:2010PNAS..107.5393S. doi:10.1073/pnas.0909380107. ISSN 0027-8424. PMC 2851759. PMID 20203007.

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DNA computing

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DNA computing is an emerging branch of unconventional computing which uses DNA, biochemistry, and molecular biology hardware, instead of the traditional...

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DNA digital data storage

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DNA digital data storage is the process of encoding and decoding binary data to and from synthesized strands of DNA. While DNA as a storage medium has...

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Unconventional computing

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Unconventional computing is computing by any of a wide range of new or unusual methods. It is also known as alternative computing. The term unconventional...

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Natural computing

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geometry, artificial life, DNA computing, and quantum computing, among others. Computational paradigms studied by natural computing are abstracted from natural...

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Biological computing

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Computer DNA computing Human biocomputer Molecular electronics Nanotechnology Nanobiotechnology Peptide computing Wetware computer Unconventional computing Wispelway...

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Leonard Adleman

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2002 Turing Award. He is also known for the creation of the field of DNA computing. Leonard M. Adleman was born to a Jewish family in California. His family...

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Computer

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of the analytical engine's computing unit (the mill) in 1888. He gave a successful demonstration of its use in computing tables in 1906. In his work...

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Acrydite

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(2001). "Solution of a satisfiability problem on a gel-based DNA computer" (PDF). DNA Computing. Lecture Notes in Computer Science. Vol. 2054. pp. 27–42....

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DNA sequencing

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genome sequencing Circular consensus sequencing DNA computing – Computing using molecular biology hardware DNA field-effect transistor – transistor which uses...

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Molecular logic gate

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several practical applications in molecular electronics, biosensing, DNA computing, nanorobotics, and cell imaging, among others.   For logic gates with...

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Computing

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Computing is any goal-oriented activity requiring, benefiting from, or creating computing machinery. It includes the study and experimentation of algorithmic...

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Biocomputing

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computing, systems of biologically derived molecules that perform computational processes DNA computing, a form of biological computing that uses DNA...

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DNA nanotechnology

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structures had the advantage that they provided the ability to implement DNA computing, which was demonstrated by Winfree and Paul Rothemund in their 2004...

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Lateral computing

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Lateral computing is a lateral thinking approach to solving computing problems. Lateral thinking has been made popular by Edward de Bono. This thinking...

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List of Jewish American computer scientists

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Americans. Scott Aaronson, quantum computing Hal Abelson, artificial intelligence Leonard Adleman, RSA cryptography, DNA computing, Turing Award (2002) Adi Shamir...

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Chaos theory

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text and image encryption method based on chaos theory and DNA computing". Natural Computing. 12 (1): 101–107. doi:10.1007/s11047-012-9334-9. S2CID 18407251...

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DNA replication

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molecular biology, DNA replication is the biological process of producing two identical replicas of DNA from one original DNA molecule. DNA replication occurs...

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Peptide computing

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gene Computational complexity theory DNA computing Molecular electronics Parallel computing Unconventional computing Molecular logic gate M. Sakthi Balan;...

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Erik Winfree

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DNA computing and DNA nanotechnology. In 1998, Winfree in collaboration with Nadrian Seeman published the creation of two-dimensional lattices of DNA...

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List of Israeli inventions and discoveries

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Yoav Eichen from Technion. World's smallest DNA computing machine system – "the smallest biological computing device" ever constructed, according to Guinness...

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Richard Lipton

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in Computing in the College of Computing at the Georgia Institute of Technology. He has worked in computer science theory, cryptography, and DNA computing...

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Theoretical computer science

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geometry, artificial life, DNA computing, and quantum computing, among others. Computational paradigms studied by natural computing are abstracted from natural...

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Mechagodzilla

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built around the skeleton of the original Godzilla from 1954 and a DNA computing-based operating system. During its first battle with Godzilla four years...

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Nucleic acid design

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conformation. Nucleic acid design is central to the fields of DNA nanotechnology and DNA computing. It is necessary because there are many possible sequences...

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DNA profiling

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DNA profiling (also called DNA fingerprinting and genetic fingerprinting) is the process of determining an individual's deoxyribonucleic acid (DNA) characteristics...

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Martyn Amos

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Northumbria University, working in natural computation, crowd simulation, DNA computing and synthetic biology. He was born in Hexham, Northumberland in 1971...

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