Global Information Lookup Global Information

PLUMED information


PLUMED
Developer(s)Max Bonomi, Giovanni Bussi, Carlo Camilloni, Gareth Tribello
Initial release2009; 15 years ago (2009)
Stable release
2.7.1 / April 16, 2021; 3 years ago (2021-04-16)
Repositorygithub.com/plumed/plumed2
Written inC++ (bindings also available for C, Fortran, and Python)
Operating systemLinux, macOS
TypeMolecular dynamics
LicenseGNU LGPL
Websitewww.plumed.org

PLUMED is an open-source library implementing enhanced-sampling algorithms, various free-energy methods, and analysis tools for molecular dynamics simulations. It is designed to be used together with ACEMD, AMBER, DL_POLY, GROMACS, LAMMPS, NAMD, OpenMM, ABIN, CP2K, i-PI, PINY-MD, and Quantum ESPRESSO, but it can also be used together with analysis and visualization tools VMD, HTMD, and OpenPathSampling.[1][2]

In addition, PLUMED can be used as a standalone tool for analysis of molecular dynamics trajectories. A graphical user interface named METAGUI is available.[3]

  1. ^ Bonomi, Massimiliano; Branduardi, Davide; Bussi, Giovanni; Camilloni, Carlo; Provasi, Davide; Raiteri, Paolo; Donadio, Davide; Marinelli, Fabrizio; Pietrucci, Fabio (2009-10-01). "PLUMED: A portable plugin for free-energy calculations with molecular dynamics". Computer Physics Communications. 180 (10): 1961–1972. arXiv:0902.0874. Bibcode:2009CoPhC.180.1961B. doi:10.1016/j.cpc.2009.05.011. ISSN 0010-4655. S2CID 4852774.
  2. ^ Tribello, Gareth A.; Bonomi, Massimiliano; Branduardi, Davide; Camilloni, Carlo; Bussi, Giovanni (2014-02-01). "PLUMED 2: New feathers for an old bird". Computer Physics Communications. 185 (2): 604–613. arXiv:1310.0980. Bibcode:2014CoPhC.185..604T. doi:10.1016/j.cpc.2013.09.018. ISSN 0010-4655. S2CID 17904052.
  3. ^ Biarnés, Xevi; Pietrucci, Fabio; Marinelli, Fabrizio; Laio, Alessandro (2012-01-01). "METAGUI. A VMD interface for analyzing metadynamics and molecular dynamics simulations". Computer Physics Communications. 183 (1): 203–211. Bibcode:2012CoPhC.183..203B. doi:10.1016/j.cpc.2011.08.020. ISSN 0010-4655.

and 22 Related for: PLUMED information

Request time (Page generated in 0.5504 seconds.)

PLUMED

Last Update:

PLUMED is an open-source library implementing enhanced-sampling algorithms, various free-energy methods, and analysis tools for molecular dynamics simulations...

Word Count : 284

Plumed basilisk

Last Update:

The plumed basilisk (Basiliscus plumifrons), also called the green basilisk, double crested basilisk, or Jesus Christ lizard, is a species of lizard in...

Word Count : 2557

Plumed guineafowl

Last Update:

The plumed guineafowl (Guttera plumifera) is a member of the guineafowl bird family. It is found in humid primary forest in Central Africa. It resembles...

Word Count : 159

Plumed egret

Last Update:

The plumed egret (Ardea plumifera) is a species of heron native to Australia and Oceania. Previously this species was regarded as a subspecies of the intermediate...

Word Count : 432

Plumed whistling duck

Last Update:

The plumed whistling duck (Dendrocygna eytoni), also called the grass whistling duck, is a whistling duck that breeds in Australia. It is a predominantly...

Word Count : 539

Plumed Horse

Last Update:

Plumed Horse is a restaurant in Saratoga, California, United States. The restaurant serves New American cuisine and has received a Michelin star. List...

Word Count : 91

The Plumed Serpent

Last Update:

The Plumed Serpent is a 1926 political novel by D. H. Lawrence; Lawrence conceived the idea for the novel while visiting Mexico in 1923, and its themes...

Word Count : 6540

Celosia argentea

Last Update:

Celosia argentea, commonly known as the plumed cockscomb or silver cock's comb, is a herbaceous plant of tropical origin in the Amaranthaceae family from...

Word Count : 843

Marbled frogmouth

Last Update:

marmoratus is found on Cape York Peninsula, plumiferus (known locally as the plumed frogmouth) is found in south-east Queensland. Rigidipenna inexpectatus,...

Word Count : 598

Feathered Serpent

Last Update:

the rattlesnake covered with feathers that constituted the later Mesoamerican Feathered Serpent. Media related to Plumed serpent at Wikimedia Commons...

Word Count : 1723

Ptilophora plumigera

Last Update:

Ptilophora plumigera, the plumed prominent, is a moth of the family Notodontidae. The species was first described by Michael Denis and Ignaz Schiffermüller...

Word Count : 98

Man in a Plumed Beret

Last Update:

Man in a Plumed Beret is a c.1659-1661 oil on canvas painting attributed to Rembrandt. It is now in the National Gallery of Denmark in Copenhagen. SMK...

Word Count : 33

Brickellia brachyphylla

Last Update:

Brickellia brachyphylla, the plumed brickellbush or Hinckley's brickellbush, is a North American species of flowering plant in the family Asteraceae. It...

Word Count : 165

Genoplesium plumosum

Last Update:

Genoplesium plumosum, commonly known as the Tallong midge-orchid or plumed midge-orchid, is a species of orchid endemic to New South Wales. It is a small...

Word Count : 801

Parotia

Last Update:

Paradisaeidae. They are endemic to New Guinea. They are also known as six-plumed birds of paradise, due to their six head quills. These birds were featured...

Word Count : 381

Mindanao miniature babbler

Last Update:

The Mindanao miniature babbler (Micromacronus sordidus) is a bird species in the family Cisticolidae. It was formerly included in M. leytensis as a subspecies...

Word Count : 132

Guineafowl

Last Update:

Agelastes lack the spots. While several species are relatively well known, the plumed guineafowl and the two members of the genus Agelastes remain relatively...

Word Count : 1193

Spectacled longbill

Last Update:

spectacled longbill (Oedistoma iliolophus), also known as dwarf longbill, plumed longbill or dwarf honeyeater, is a species of bird in the family Melanocharitidae...

Word Count : 83

Metadynamics

Last Update:

S2CID 17904052. "MD engines - PLUMED". www.plumed.org. Archived from the original on 2016-02-07. Retrieved 2016-01-26. "howto:install_with_plumed [CP2K Open Source...

Word Count : 3757

Belgium

Last Update:

Carnival of Binche, near Mons, with its famous Gilles (men dressed in high, plumed hats and bright costumes) is held just before Lent (the 40 days between...

Word Count : 18680

Plumularia setacea

Last Update:

Plumularia setacea, the plumed hydroid or little sea bristle, is a colonial hydrozoan in the family Plumulariidae and is found worldwide. It lives from...

Word Count : 108

Lepidoptera

Last Update:

Epermenioidea Epermeniidae (fringe-tufted moths) Alucitoidea Alucitidae (many-plumed moths) Tineodidae (false plume moths) Pterophoroidea Pterophoridae (plume...

Word Count : 16831

PDF Search Engine © AllGlobal.net