List of functional connectivity software information
Functional connectivity software is used to study functional properties of the connectome using functional Magnetic Resonance Imaging (fMRI) data in the resting state and during tasks. To access many of these software applications visit the NIH funded Neuroimaging Informatics Tools and Resources Clearinghouse (NITRC) site.
Name
Description
Programming language
Is part of / requires
Developer/Organization
CONN[1]
Functional connectivity analysis and display tool
Matlab
SPM
McGovern Institute for Brain Research, Massachusetts Institute of Technology: MIT
DCM[2]
Dynamic Causal Modelling analysis
Matlab
SPM
Wellcome Trust Centre for Neuroimaging, University College London
FATCAT[3]
Functional and tractographic connectivity analysis
C
AFNI
Scientific and Statistical Computing Core, National Institute of Mental Health: NIMH
FSFC[4]
Seed-based functional connectivity analysis
Shell
FreeSurfer
Martinos Center for Biomedical Imaging
MELODIC[5]
Independent component analysis
C
FSL
Functional Magnetic Resonance Imaging of the Brain Analysis Group, Oxford University
^Whitfield-Gabrieli, S.; Nieto-Castanon, A. (2012). "Conn: a functional connectivity toolbox for correlated and anticorrelated brainnetworks". Brain Connect. 2 (3): 125–141. doi:10.1089/brain.2012.0073. PMID 22642651.
^Friston, K. J.; Kahan, J.; Biswal, B.; Razi, A. (2014). "A DCM for resting state fMRI". NeuroImage. 94 (100): 396–407. doi:10.1016/j.neuroimage.2013.12.009. PMC 4073651. PMID 24345387.
^Taylor, P. A.; Saad, Z. S. (2013). "FATCAT: (an efficient) Functional and Tractographic Connectivity Analysis Toolbox". Brain Connect. 3 (5): 523–535. doi:10.1089/brain.2013.0154. PMC 3796333. PMID 23980912.
^Beckmann, C. F.; DeLuca, M.; Devlin, J. T.; Smith, S. M. (2005). "Investigations into resting-state connectivity using independentcomponent analysis". Philos. Trans. R. Soc. Lond. B Biol. Sci. 360 (1457): 1001–1013. doi:10.1098/rstb.2005.1634. PMC 1854918. PMID 16087444.
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