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List of cheminformatics toolkits information


Cheminformatics toolkits are notable software development kits that allow cheminformaticians to develop custom computer applications for use in virtual screening, chemical database mining, and structure-activity studies.[1][2] Toolkits are often used for experimentation with new methodologies. Their most important functions deal with the manipulation of chemical structures and comparisons between structures. Programmatic access is provided to properties of individual bonds and atoms.

  1. ^ Jean-Loup Faulon; Andreas Bender (April 2010). Handbook of Chemoinformatics Algorithms. Chapman & Hall. ISBN 978-1420082920.
  2. ^ Johann Gasteiger (November 2003). Chemoinformatics. Wiley-VCH. ISBN 3527306811.

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List of cheminformatics toolkits

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Cheminformatics toolkits are notable software development kits that allow cheminformaticians to develop custom computer applications for use in virtual...

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List of toolkits

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Accessibility Toolkit Adventure Game Toolkit B-Toolkit Cheminformatics toolkits Dojo Toolkit Fox toolkit GTK, the GIMP Toolkit Google Web Toolkit (GWT) Harmony...

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RDKit

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RDKit is open-source toolkit for cheminformatics. It was developed by Greg Landrum with numerous additional contributions from the RDKit open source community...

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Chemistry Development Kit

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S2CID 206032727. O'Boyle, Noel M (2008). "Cinfony – combining Open Source cheminformatics toolkits behind a common interface". Chemistry Central Journal. 2 (1): 24...

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Collaborative Drug Discovery

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Sanofi Aventis. Collaborative software List of electronic laboratory notebook software packages Cheminformatics toolkits "CDD Milestones". Collaborative Drug...

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Chemical database

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J. M. (2000). "Small Molecule Subgraph Detector (SMSD) toolkit". Journal of Cheminformatics. 1 (1): 12. doi:10.1186/1758-2946-1-12. PMC 2820491. PMID 20298518...

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JME Molecule Editor

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editor Cheminformatics Comparison of software for molecular mechanics modeling Ertl, Peter (2010). "Molecular structure input on the web". Journal of Cheminformatics...

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Chemical table file

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information. The molfile is sufficiently common that most, if not all, cheminformatics software systems/applications are able to read the format, though not...

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KNIME

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; Berthold, M.; Steinbeck, C. (2013). "KNIME-CDK: Workflow-driven Cheminformatics". BMC Bioinformatics. 14: 257. doi:10.1186/1471-2105-14-257. PMC 3765822...

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Molecule mining

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chemical similarity metrics, which has a long tradition in the field of cheminformatics. Typical approaches to calculate chemical similarities use chemical...

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Machine learning

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decision-making Banking Behaviorism Bioinformatics Brain–machine interfaces Cheminformatics Citizen Science Climate Science Computer networks Computer vision Credit-card...

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Scientific workflow system

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tools to address Cheminformatics workflows Swift parallel scripting language, a scripting language with many of the capabilities of scientific workflow...

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Natural product

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natural products databases: where to find data in 2020". Journal of Cheminformatics. 12 (1): 20. doi:10.1186/s13321-020-00424-9. PMC 7118820. PMID 33431011...

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OctaDist

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Materials group at University of Bordeaux. OctaDist is written entirely in Python binding to Tkinter graphical user interface toolkit. It is available for Windows...

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