JAligner is an open source Java implementation of the Smith-Waterman algorithm[1] with Gotoh's improvement[2] for biological local pairwise sequence alignment using the affine gap penalty model. It was written by Ahmed Moustafa.
^Smith TF and Waterman MS (1981). Identification of common molecular subsequences. J Mol Biol, 147:195-197.
^Gotoh O (1982). An improved algorithm for matching biological sequences. J Mol Biol, 162:705-708.
JAligner is an open source Java implementation of the Smith-Waterman algorithm with Gotoh's improvement for biological local pairwise sequence alignment...
(GL) alignment with statistics Protein Global in query W. Pearson 2007 JAligner Java open-source implementation of Smith-Waterman Both Local A. Moustafa...
Global Information